rs33725517 SNP Detail

Summary

• ID
  rs33725517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24835945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCAACA ATTGTGTGTA
  AAGATTGTAC TTTATATTTG ATTCTATGGA TAGTAAGCAA ATATCAAGAT ATCTTACCTT
  TACACACATA AACAAAGCTG AAAGTTATTC CTACATTCTT TCTTTATATT GTAAATAAAC
  TCAGAAATAG TTTAAAAGAA CTGAAGTACC TCTGTTTTCC ATTAAATCTC AAAAGTGCCT
  Y
  TTTATTGTAA TGTGACTTAG ACTGAAATGA CAGAATGTCA GCACTCCAAG ATGATACGTA
  AGAACTGTGT AGATTTGCTG AAAATATGTT TCAATAAGAT AATATTAGAA GAGGAAGAAC
  AGGGCATGTG TTACCAAAAA GTAAGATATC TTTTCCCTAT GTATGAATAA GACAGTAGAA
  AATCATACTC CCCCATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss46848960	NES10843991	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33725517					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848960	NES10843991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24835945 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574270	regulatory region 574270	1051 bp proximal
Rr574271	regulatory region 574271	1831 bp proximal
Tssr32764	transcription start site region 32764	1780 bp downstream
Tssr32765	transcription start site region 32765	1827 bp downstream