rs33724941 SNP Detail

Summary

• ID
  rs33724941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106422733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACGGCT TTAGACTCTG
  TTCCGTCCTG TTTTCCTGCC TGGGTTATCA CATGGGCGCT GAGATTGAGG AGCAAGTGCT
  CTTAACTACT TAGTCACTGC TCTAGCTCAC TCAAATTTTT ATTTCATTAT TATTTTCAAA
  ATGGAAACAA AAGGTGGTAA TGTTGCCGAA TTAATGACTA GTCTTCAAAA TCAAGGGACA
  R
  TAACCATCAC TTAAGAAAAA AACATCCTTG AAGATAGTAA TCTATAGTGT AATTGCACCT
  AAAACAAAGA TCTATTAATA TAAAATTAAG TTTCTGTTGC ATTAGTTTGC TAGAACCTGA
  AGATTCAGAG GGAAAAAATA AAATTTTCTT TATCTTTGAA AATGGTTTGA TATCTTTACT
  AAAATCAATA CTTTATCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848016	NES10715510	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33724941					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848016	NES10715510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106422733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				Noncoding-Transcript-Variant
Rr582852	regulatory region 582852			100 bp distal
Tssr34965	transcription start site region 34965			1877 bp upstream
Tssr34966	transcription start site region 34966			1330 bp upstream
Tssr34967	transcription start site region 34967			684 bp downstream
Tssr34968	transcription start site region 34968			718 bp downstream
Tssr34969	transcription start site region 34969			854 bp downstream
Tssr34970	transcription start site region 34970			1598 bp downstream