rs33724842 SNP Detail

Summary

• ID
  rs33724842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106452838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGTTGAC ATGAAAAAGA
  AAATCAGTAT TTATTGAGTA TGATTCTTCT AGTATTTAAT GAGCACTTGG TTGTTCTAGA
  CCTAGAAAGA TATAGCAGTC TACGTTCTCA GGAAATGCAA AAGGGTGTGT GAGTGGGGGT
  GAATGAGTCT CGTCCTCAAC CAAGTTATCG TATAAATAAC TTTTTGGAGG CATAGAGGGG
  Y
  CATTTTCTGA CAAAAGCATT TTTCCATTAG GCATGGATAT ATGCTTGACA AAGAAACAAT
  GGTTAATGAA TAAATTTACT AAAATCCATC AATTTGTAAG TTTTCAAGTC TCCCATGAAA
  AACACAGGGT AACAGTGTCT GACCCACTTT AGTCCTGTCA TGGACGGGGT GGGAGGGGGC
  ATCTGATAAG TATCACATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46848310	NES10713862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33724842					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848310	NES10713862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106452838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13666	CpG island 13666			1635 bp proximal
Rr375539	regulatory region 375539			1710 bp upstream
Rr582853	regulatory region 582853			283 bp distal
Rr582854	regulatory region 582854			114 bp proximal
Rr582855	regulatory region 582855			1336 bp proximal
Tssr31114	transcription start site region 31114			358 bp upstream
Tssr34980	transcription start site region 34980			639 bp downstream