GGCTGCCTGT GGAAATTCAG TTTACAATAT TGACCGCTGT GGTAGCCTTT CCACTTGTAC TCAGTAAACA CCCTCCCTCC TGCTACAACC TGACCCTAGT GCTCTACTTT CCTGTAACGC TTATCTGACT TTGAAGGTTT TGTTTGTAGG GCTTTATTTT GTCTTTACCC TCAACAGTGC TCCTTAAGTT CCATGACCGT R GGCCCATTCC TGTCTTGTTA ACATTCTTTT CCCCACAGTC TCATACCACC GTTGACATGA AAAAGAAAAT CAGTATTTAT TGAGTATGAT TCTTCTAGTA TTTAATGAGC ACTTGGTTGT TCTAGACCTA GAAAGATATA GCAGTCTACG TTCTCAGGAA ATGCAAAAGG GTGTGTGAGT GGGGGTGAAT GAGTCTCGTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46848307 | NES10713861 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | G | A | A | G |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs33724839 | SNP | A | A | A | A | A | A | A | A | A | G | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46848307 | NES10713861 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:106452591 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cept1 | choline/ethanolaminephosphotransferase 1 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi13666 | CpG island 13666 | 1882 bp proximal | ||||||
Rr375539 | regulatory region 375539 | 1957 bp upstream | ||||||
Rr582853 | regulatory region 582853 | 36 bp distal | ||||||
Rr582854 | regulatory region 582854 | 361 bp proximal | ||||||
Rr582855 | regulatory region 582855 | 1583 bp proximal | ||||||
Tssr31114 | transcription start site region 31114 | 605 bp upstream | ||||||
Tssr34980 | transcription start site region 34980 | 886 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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