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rs33724839 SNP Detail
Summary
  • ID
    rs33724839
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:106452591 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCTGCCTGT GGAAATTCAG
    TTTACAATAT TGACCGCTGT GGTAGCCTTT CCACTTGTAC TCAGTAAACA CCCTCCCTCC
    TGCTACAACC TGACCCTAGT GCTCTACTTT CCTGTAACGC TTATCTGACT TTGAAGGTTT
    TGTTTGTAGG GCTTTATTTT GTCTTTACCC TCAACAGTGC TCCTTAAGTT CCATGACCGT
    R
    GGCCCATTCC TGTCTTGTTA ACATTCTTTT CCCCACAGTC TCATACCACC GTTGACATGA
    AAAAGAAAAT CAGTATTTAT TGAGTATGAT TCTTCTAGTA TTTAATGAGC ACTTGGTTGT
    TCTAGACCTA GAAAGATATA GCAGTCTACG TTCTCAGGAA ATGCAAAAGG GTGTGTGAGT
    GGGGGTGAAT GAGTCTCGTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss46848307 NES10713861 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A G A A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs33724839 SNP A A A A A A A A A G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46848307 NES10713861 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:106452591 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cept1 choline/ethanolaminephosphotransferase 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Cpgi13666 CpG island 13666 1882 bp proximal
Rr375539 regulatory region 375539 1957 bp upstream
Rr582853 regulatory region 582853 36 bp distal
Rr582854 regulatory region 582854 361 bp proximal
Rr582855 regulatory region 582855 1583 bp proximal
Tssr31114 transcription start site region 31114 605 bp upstream
Tssr34980 transcription start site region 34980 886 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory