rs33724199 SNP Detail

Summary

• ID
  rs33724199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106420680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTATAT GTATGTATTA
  AATTTTGAGT ATCAAGCAGA GAATTACATT GCATAGCTAC ACAGTCTGAA GTAAGTTCTC
  TTCAGTAGCA ACTGAAATGG TGACCTTTAA CTGAAAGAAA ATAAATGTAT TGCCCCCTTG
  ATTTACTGTT CACTGTGCTA CTGGTGTGGG AAAAAAAAAT CAACCAGTTC TGAATCAGAT
  Y
  CTTACTCTCA CTCGGTTAAC TACCCTCACA TTCAGGAAAG ATGATTGAAA GTAGCTGAGT
  ATGAGCTTTG AGGTAGGGTT ATTGGAAATG ACCGGATGGT CAAGAAGAGA CAGTGCAAAG
  GGAGGTAGGT GTGGGGAGCG GGCAAGAGAA ATTAGGAGCC TGAAAGTTTG AAGAAGAAAA
  AAAAAAAAAA AAAAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848004	NES10715502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33724199					SNP	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848004	NES10715502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106420680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				Noncoding-Transcript-Variant
Rr582852	regulatory region 582852			1679 bp proximal
Tssr34964	transcription start site region 34964			1897 bp upstream
Tssr34965	transcription start site region 34965			172 bp downstream
Tssr34966	transcription start site region 34966			717 bp downstream