rs33720744 SNP Detail

Summary

• ID
  rs33720744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110172764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CCAAGAGCAT GTGGTTGGGG
  Y
  CTTTCCTAGA CTTTTCTGGC TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46310796	mCV24752308	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss61449572	NES16838477	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T		C	T	T	C		C
ss136958507	ENSMUSSNP3824437	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323193643	CHEV_9_110246200	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33720744					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449572	NES16838477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110172764 () rs orientation: forward

Symbol	Name	Function Class
Rr687097	regulatory region 687097	within coordinates
Rr687098	regulatory region 687098	1392 bp proximal
Scap	SREBF chaperone	Intron
Tssr87348	transcription start site region 87348	375 bp upstream
Tssr87349	transcription start site region 87349	467 bp upstream
Tssr87350	transcription start site region 87350	489 bp upstream
Tssr87351	transcription start site region 87351	513 bp upstream
Tssr87352	transcription start site region 87352	555 bp upstream