rs33718703 SNP Detail

Summary

• ID
  rs33718703
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106456719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACGTTTCC TTTTTGGAGG
  GGAAGGCACT GGACAGTTGT TAGTCTTCCA TGTTACTCTT CCTGTCTACT TTGGTTTCTC
  ACTTGTCTCC GAAAGACTCT TAACAATATT TTAAGCCCTG CCTTGCTTCT AAGCAGTCAG
  TTTAAACAGC TAGAATCTTC AAAGCCTAAA CACATACAAG TATTTAATAC CTCAAAAAAA
  W
  TATATGCAGC CATGTATGGG TAGTTATGAC TGCAATTTAT GAATTGTTAT AGTATTTTAT
  ACTTATATTT CACATAGAAT ACTACATCCC AGAAATTTGA AATTTGCCTG AAACTCAATA
  ATTAGAAAGT GTTAATTATG GATTTTTTTA AAAAAAGATA ACATCCAGGG GTTAGGGAAA
  TGCTGTGCCA AACAATAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46848331	NES10713745	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33718703					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848331	NES10713745	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106456719 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	1601 bp upstream
Cpgi13666	CpG island 13666	1042 bp distal
Dram2	DNA-damage regulated autophagy modulator 2	Intron
Rr375539	regulatory region 375539	350 bp downstream
Rr582855	regulatory region 582855	1832 bp distal
Rr582856	regulatory region 582856	1521 bp distal
Rr582857	regulatory region 582857	629 bp distal
Rr582858	regulatory region 582858	89 bp distal
Tssr31115	transcription start site region 31115	1689 bp downstream
Tssr31116	transcription start site region 31116	1665 bp downstream
Tssr31117	transcription start site region 31117	1515 bp downstream
Tssr34981	transcription start site region 34981	1825 bp upstream
Tssr34982	transcription start site region 34982	1810 bp upstream
Tssr34983	transcription start site region 34983	1680 bp upstream
Tssr34984	transcription start site region 34984	1622 bp upstream