rs33718700 SNP Detail

Summary

• ID
  rs33718700
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106456277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTGAT ATTTCTATTC
  GCCTCTGAAA AAAACCTGGG GCCACCTGTT CATTCACTTG GAACATCCAG AGTTTACACT
  TTTGTTATTC TTTAGTTATT ACCACTTAGA AGAGACAACA TTAAAAAGGT TCTTTTTATT
  ACCAGTGGCT TTTAAATGCT TATGAAAATA AAAAATGTAA CTGGATTTCT GACTCATGGA
  S
  CTTCAAAGTA AGCAGAGGAG ATGGGTAAGA GATGCAAAAA AATTTGTTAA ATATCCTTAC
  TGTTGTGTGA AGTTTTCTTA TATATTTTTA AGTCATCTTA AAGCTTTCTT TTTTGGTTCT
  GGAAATTGAA CTTAAGGCCT CTTGTTTGCT ATGCAAACAC TCTTTAAAAG GGTTCTTGAA
  TGCTTTGACC CATAAAATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848328	NES10713744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33718700					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848328	NES10713744	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106456277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			1159 bp upstream
Cpgi13666	CpG island 13666			600 bp distal
Dram2	DNA-damage regulated autophagy modulator 2			Intron
				mRNA-UTR
Rr375539	regulatory region 375539			within coordinates
Rr582855	regulatory region 582855			1390 bp distal
Rr582856	regulatory region 582856			1079 bp distal
Rr582857	regulatory region 582857			187 bp distal
Rr582858	regulatory region 582858			93 bp proximal
Tssr31115	transcription start site region 31115			1247 bp downstream
Tssr31116	transcription start site region 31116			1223 bp downstream
Tssr31117	transcription start site region 31117			1073 bp downstream
Tssr34981	transcription start site region 34981			1383 bp upstream
Tssr34982	transcription start site region 34982			1368 bp upstream
Tssr34983	transcription start site region 34983			1238 bp upstream
Tssr34984	transcription start site region 34984			1180 bp upstream