rs33718697 SNP Detail

Summary

• ID
  rs33718697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106455890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTGCCC TTATTTCTAC
  TTGGTTGGGG CTGAGGAAGT TCAAAACTGA GACCAGTGGT GACCTTGTGT TTACACAGAG
  CTCTGTCTCC ACCCCATGAT TGTGTTTCAA AGGGAGTGGT CCCTAGTTGA AAGGAAATCA
  CAAGTCCTGG GAATCCTAAC AGCTGCTTTC CTTTGTAAAG CACTGAGACA GGAATAAGTT
  Y
  TCCAGCTTTC CCAATTTTAA TTTACATACC GAATGCAACA TTTTTTTAAT CTATCGGGGC
  TGCGTTATCA AATTTTAATT TATTGGCAGT GAAACTAGAT GCTTTGAGAT TAGCCATTGG
  AAAATGTTAC ATTTGTCAAG AGGCCATATT AGAATTTAGG AAAATAGTCC TTGTTATGCT
  TTGTTTGTGG CCTGATATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46848325	NES10713743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33718697					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848325	NES10713743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106455890 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	772 bp upstream
Cpgi13666	CpG island 13666	213 bp distal
Dram2	DNA-damage regulated autophagy modulator 2	Intron
Rr375539	regulatory region 375539	within coordinates
Rr582855	regulatory region 582855	1003 bp distal
Rr582856	regulatory region 582856	692 bp distal
Rr582857	regulatory region 582857	within coordinates
Rr582858	regulatory region 582858	480 bp proximal
Tssr31115	transcription start site region 31115	860 bp downstream
Tssr31116	transcription start site region 31116	836 bp downstream
Tssr31117	transcription start site region 31117	686 bp downstream
Tssr34981	transcription start site region 34981	996 bp upstream
Tssr34982	transcription start site region 34982	981 bp upstream
Tssr34983	transcription start site region 34983	851 bp upstream
Tssr34984	transcription start site region 34984	793 bp upstream