rs33718694 SNP Detail

Summary

• ID
  rs33718694
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106455306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTCAGA AAAGGTTGAG
  GCGCGCCTCC GAGCTACTCG GGAGCGCGCC CCGGGGCTCC GCCCAGGCTC CTACAGTGGG
  CCTGTTCTGC ACTTTGAGGC TGGAGCTGGC TGGTCGGGGA CAGGAAAGAA GGTGAGTGGG
  AGGGGGAAAA GTGCCTGGCC TGGCGCTCGG CAGGTTTTCT ACTTGGGTGC TGTGTCGAAG
  K
  GTGGTTCGCA AGCCAAGAGC GAGGGCACAA CGCGAGCCCC CTTGGTCCCA CGGGCGCGCG
  AGCCACGCGA ACCTCGGTAG CTTCACCTGG TTCCGTGAAC TTCGTGACAC CCACGACTAG
  AGTCGCGAGC CAGCTCCGGG AACCCACGAA TCACGGGAGA TGACAACTAG GCTGAGGTCT
  CCGCGTCCTA CTTTTTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46848322	NES10713742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33718694					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848322	NES10713742	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106455306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			188 bp upstream
Cpgi13666	CpG island 13666			within coordinates
Dram2	DNA-damage regulated autophagy modulator 2			Intron
				mRNA-UTR
Rr375539	regulatory region 375539			within coordinates
Rr582855	regulatory region 582855			419 bp distal
Rr582856	regulatory region 582856			108 bp distal
Rr582857	regulatory region 582857			within coordinates
Rr582858	regulatory region 582858			1064 bp proximal
Tssr31115	transcription start site region 31115			276 bp downstream
Tssr31116	transcription start site region 31116			252 bp downstream
Tssr31117	transcription start site region 31117			102 bp downstream
Tssr34980	transcription start site region 34980			1818 bp upstream
Tssr34981	transcription start site region 34981			412 bp upstream
Tssr34982	transcription start site region 34982			397 bp upstream
Tssr34983	transcription start site region 34983			267 bp upstream
Tssr34984	transcription start site region 34984			209 bp upstream