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rs33718694 SNP Detail
Summary
  • ID
    rs33718694
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:106455306 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGACTCAGA AAAGGTTGAG
    GCGCGCCTCC GAGCTACTCG GGAGCGCGCC CCGGGGCTCC GCCCAGGCTC CTACAGTGGG
    CCTGTTCTGC ACTTTGAGGC TGGAGCTGGC TGGTCGGGGA CAGGAAAGAA GGTGAGTGGG
    AGGGGGAAAA GTGCCTGGCC TGGCGCTCGG CAGGTTTTCT ACTTGGGTGC TGTGTCGAAG
    K
    GTGGTTCGCA AGCCAAGAGC GAGGGCACAA CGCGAGCCCC CTTGGTCCCA CGGGCGCGCG
    AGCCACGCGA ACCTCGGTAG CTTCACCTGG TTCCGTGAAC TTCGTGACAC CCACGACTAG
    AGTCGCGAGC CAGCTCCGGG AACCCACGAA TCACGGGAGA TGACAACTAG GCTGAGGTCT
    CCGCGTCCTA CTTTTTCTCT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss46848322 NES10713742 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T G T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33718694 SNP T T T T T T T T T T G T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46848322 NES10713742 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:106455306 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cept1 choline/ethanolaminephosphotransferase 1 188 bp upstream
Cpgi13666 CpG island 13666 within coordinates
Dram2 DNA-damage regulated autophagy modulator 2 Intron
mRNA-UTR
Rr375539 regulatory region 375539 within coordinates
Rr582855 regulatory region 582855 419 bp distal
Rr582856 regulatory region 582856 108 bp distal
Rr582857 regulatory region 582857 within coordinates
Rr582858 regulatory region 582858 1064 bp proximal
Tssr31115 transcription start site region 31115 276 bp downstream
Tssr31116 transcription start site region 31116 252 bp downstream
Tssr31117 transcription start site region 31117 102 bp downstream
Tssr34980 transcription start site region 34980 1818 bp upstream
Tssr34981 transcription start site region 34981 412 bp upstream
Tssr34982 transcription start site region 34982 397 bp upstream
Tssr34983 transcription start site region 34983 267 bp upstream
Tssr34984 transcription start site region 34984 209 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory