rs33715184 SNP Detail

Summary

• ID
  rs33715184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGTCCGT TACAAATCTC AAGCGTTACA CAGTAGCATC
  TCTTAGCCAT CCAAACAGTT CAGGGACGCA AAGCCGAAGG AAGGCTCTGC CAGAACTGCC
  K
  TCTTTGACAG GCATATACTC TGCTCACATC ACCAACGCCC CCACCACCAC CAACCCAAGC
  AGACAGAGTA TAAACAGATG CTCTGACCTC ACGGGAGCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45312685	mCV25097170	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss320362022	CHEV_2_79969150	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33715184					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			within coordinates
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			1788 bp downstream
Rr560060	regulatory region 560060			1935 bp distal
Rr560061	regulatory region 560061			within coordinates
Rr560062	regulatory region 560062			455 bp proximal
Tssr24917	transcription start site region 24917			within coordinates
Tssr24918	transcription start site region 24918			20 bp downstream
Tssr24919	transcription start site region 24919			124 bp downstream
Tssr24920	transcription start site region 24920			167 bp downstream
Tssr24921	transcription start site region 24921			190 bp downstream
Tssr24922	transcription start site region 24922			224 bp downstream
Tssr24923	transcription start site region 24923			251 bp downstream
Tssr24924	transcription start site region 24924			297 bp downstream
Tssr24925	transcription start site region 24925			542 bp downstream