rs33714516 SNP Detail

Summary

• ID
  rs33714516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106381850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTGGTC AGGGCATTTC
  CACTAGAGTA GGTCAGCTGC CCCCTGCCAT GTGCAACTAG GTCAAGAGGT AAGAAGGGAA
  GCATTCAGGA GGGGGATATC CGTGTACCCC TCAACAGCTG CAGTACTTCC TCTTTAGGTT
  CAGCTTTCTG CCAGGTTCTC TTATCACAAA ACAGAGACTT ACATTCTCAG CAAATTCTAC
  R
  TAAAATGTAA TTGCTGTTCT CAGCTATCAT GGTGTAAAAT TGAAGGCAAG GTCAATGACC
  AAGTTAAGCA ATGCGACACA GAGACAAGTA GCAGTCCATC TCAGGACAGA TGTGCCAAAT
  TGCAGGAAGA AAAATAGCTT GGGTCTCTAT GGATTCTTTT TTTTTTTCAT TTTTATTAGG
  TATTTAGCTC ATTTACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46847674	NES10717144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33714516					SNP	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46847674	NES10717144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106381850 () rs orientation: forward

Symbol	Name	Function Class
Rr582843	regulatory region 582843	within coordinates