rs33713014 SNP Detail

Summary

• ID
  rs33713014
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144112969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGCGGGACCG ATGAAAGTAC GGGTCCCGAG AGGGTTGTTT GCGGGCTGGG
  W
  GTTACAGCGT GGTGGCATCT CAGGTACAGC TAGAACCCTG CCGCTGACCG           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45312408	mCV22516075	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss147789063	ENSMUSSNP3928925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33713014					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144112969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			Intron
				mRNA-UTR
Rr397362	regulatory region 397362			within coordinates
Rr397363	regulatory region 397363			367 bp upstream
Rr566424	regulatory region 566424			1537 bp distal
Rr566425	regulatory region 566425			488 bp distal
Rr566426	regulatory region 566426			98 bp distal
Rr566427	regulatory region 566427			within coordinates
Snx5	sorting nexin 5			256 bp upstream
Tssr20524	transcription start site region 20524			458 bp downstream
Tssr20525	transcription start site region 20525			377 bp downstream
Tssr20526	transcription start site region 20526			100 bp downstream
Tssr20527	transcription start site region 20527			within coordinates
Tssr20528	transcription start site region 20528			579 bp upstream
Tssr26594	transcription start site region 26594			981 bp upstream
Tssr26595	transcription start site region 26595			563 bp upstream
Tssr26596	transcription start site region 26596			516 bp upstream
Tssr26597	transcription start site region 26597			249 bp upstream
Tssr26598	transcription start site region 26598			202 bp upstream
Tssr26599	transcription start site region 26599			186 bp upstream