rs33712552 SNP Detail

Summary

• ID
  rs33712552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106380306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCCCTCT GGAAATGATC
  CCAGGAAAGT CGAGAGTGAT TGAATAAGCA ACCTCAGGAT TATGTGTGTA ATAATTAAGA
  TAGTCTTGAA AAACAATGGA AATTGTGTGA TTTGGAGTTG TAACAAGAAG CTCTGGTTTA
  AATTGAGAGA AAAGTTGTTG GGGTGATCAT TTTGTGCACT CTGTAAAGAT TTTGTATCAT
  Y
  CAAATTCTGA TTTTTATAAG GGCAGAGATC TGACTACATG CTCTTCGGGT ATTGTTATTT
  TTATGGCTGT ATTATATTTT GTAAACACTC CCTCCAACCC CTTCTGAATG GTCTAATAAG
  AAGCTGGTGG CCTGTAGAAA AGCAGGAGAG GCTAGTCAGG ATATCCAGCA GAGGTAGGAA
  CTCTGGGAAA GAGTATGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46847650	NES10717210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33712552					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46847650	NES10717210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106380306 () rs orientation: forward

Symbol	Name	Function Class
Rr582843	regulatory region 582843	1195 bp proximal