rs33712454 SNP Detail

Summary

• ID
  rs33712454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142093542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTCATTC TTTGCAAACA
  CACACCGCAG CCTCCTGACC CTGGCTCGCT GAAATCCCAC TCGCTAATGC TTCTGATCCA
  GCCGCAACCA TAATTACATA AGAAGCCTTA TCCTCGGAAA TGCTCTCAGC TCTGAACACC
  ATCCATCATT ATTCTCTGAA AATGCAAGAA CTATTCCACA GCTGCCTCTC CCATCCAGGA
  Y
  GCTCAGGAAA GAGACTGCCG AGGTCCTGTG AATGAGTCTC TTTGGCGTGT CAGGGTGAGG
  TGTGGGTGTT AATTTTTATG TTCAGCACAC CAGGGTGCAG GTCCCGCTAA TGATGCCACA
  TTTATTGGAG GGAAAATAAT AGGAAGGTAC AAACAGAAGC CGGAGGCTGA GGAGTTTTCT
  CTCGGTAATA GCTCAGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45812140	mCV25013588	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss51529098	NES14869839	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	C	C
ss144586639	ENSMUSSNP1967995	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33712454					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529098	NES14869839	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142093542 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	1644 bp upstream
Sdk1	sidekick cell adhesion molecule 1	Intron