rs33710903 SNP Detail

Summary

• ID
  rs33710903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106423707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAACTGC TAAGCCATAT
  CAAATTGTTT CTAACAACAT GATTCTAAGA TATAGCCAGG AGAATGAACC AAGCATGGTG
  GCAGTGGCCT GTACTCTGTA GGCATAAGCA TTAGAACTGC AAGTTCAAAG TCAGCCAGCA
  CGGGCTACAT AGCCAGACAT TGATATAAAG AGAACACAAT GTCCTTAAAT GAATATGAGC
  Y
  ATTTTAACCT CTAAATAAGG GAACAGTGAA TTCTCTAGCT GACATAAAAA TCTCAGGAGC
  CACCAAACAC TACAGGTTGA CAGCTTGGAA ATCTCCATAT CAGGACAGTT ATTACATCAG
  AGAAAGAAAA CTGCCTTTAC AAGTAATAAA GTGTAATAAC CCAAGCTAAA CTATGAGGAA
  ATTTCCTGAC CTCTTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848031	NES10715401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33710903					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848031	NES10715401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106423707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				Noncoding-Transcript-Variant
Rr582852	regulatory region 582852			1074 bp distal
Tssr34967	transcription start site region 34967			275 bp upstream
Tssr34968	transcription start site region 34968			218 bp upstream
Tssr34969	transcription start site region 34969			108 bp upstream
Tssr34970	transcription start site region 34970			624 bp downstream