rs33706042 SNP Detail

Summary

• ID
  rs33706042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127597257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGAACAG GCCAGTAGGC
  AACACTCCAT GACTCCTGCC CTGTCTGAAT TCCTGCCCTG ACTTCCTTCC ATGATGGAAG
  ACTATGTGGA AGTGTACATC AAATAAACCC TTCCCGCCCC AAGTTTTCAT GTTTCACTAC
  AGCAATAGAA CCCCCACTAA GCCAGGCATC AACACAGTGT CCAACAAAAA GGAGCTGAGG
  Y
  GGGGTCCCCA TTCTTCACAA TTCTAGAGTC TCAGAGGTGT CAATAAAAAT AATCACTTAG
  TGGCTCAGCG TTCGCACTGA TGGCACGTGA AGGATTTGGC TCCAAGGGAA AGTGTATTTT
  GTTAGGATGC AGCTGTGCTC TCCGCTGCTC TACTGCTCGC TTCGTTTACG GAAAGAAGGG
  TAATAAGGTT CTACATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45311696	mCV22279931	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss147540664	ENSMUSSNP2608429	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320500675	CHEV_2_127581073	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33706042					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127597257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp1	nephronophthisis 1 (juvenile) homolog (human)			Intron
				mRNA-UTR
Rr564596	regulatory region 564596			1829 bp proximal
Tssr26143	transcription start site region 26143			380 bp downstream