rs33702239 SNP Detail

Summary

• ID
  rs33702239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21985546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTATGG AATTAAAAAG
  CCTGCTGGGT ACTCCTTTCT CCTGGGCAAA AGTTAGAACT TCAATACCTA CTACAGTCAG
  TTCATTTGAA GAGCTAGGCA TCAGACTATT TGCCTCGGAG AACCACAGAG CGGTAATAAC
  GGCGGAAGGA CTCTGTTGGA ATGGAGAGGG GACTTTTAGT TACACGGAAT GTTTCCTCTT
  Y
  AGTGGTCCAG ACTGTCCGGA TGACTCTCTT GTCCTCTTAG GCGAGACCAC AATTCCCTGG
  AGTGATAAGC CTCCCGGTTA GCTCAGAGTC GGCCTTCATC TCTTCCTCGA CCTTTAGCAT
  CTATTGACTA GAAGCCATTT GTTATTCTGT ATTAGGAAAA CGCAGTGACA CAGAGGATCA
  GAGATCAAGT ATATTTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47830022	NES11683231	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33702239					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830022	NES11683231	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21985546 () rs orientation: forward

Symbol	Name	Function Class
Cped1	cadherin-like and PC-esterase domain containing 1	369 bp upstream
Rr627034	regulatory region 627034	446 bp distal
Rr627035	regulatory region 627035	within coordinates
Rr627036	regulatory region 627036	559 bp proximal
Tssr1788	transcription start site region 1788	706 bp upstream
Tssr55139	transcription start site region 55139	356 bp upstream
Tssr55140	transcription start site region 55140	431 bp upstream
Tssr55141	transcription start site region 55141	584 bp upstream
Tssr55142	transcription start site region 55142	608 bp upstream
Tssr55143	transcription start site region 55143	634 bp upstream
Tssr55144	transcription start site region 55144	804 bp upstream
Tssr55145	transcription start site region 55145	831 bp upstream
Tssr55146	transcription start site region 55146	891 bp upstream
Tssr55147	transcription start site region 55147	1340 bp upstream
Tssr55148	transcription start site region 55148	1423 bp upstream