rs33701521 SNP Detail

Summary

• ID
  rs33701521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21985143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGTC TCTGTCTCTC
  TCTGTGTCTG TGTCTCTCCC TCTCCCTCCC CCTCCTCTCT CTCTGCTCAT CTATCCCAAG
  CTGACTCAAG TTTCTTACTA GCAAGAGATG TCCATTTTCT GAATCTTTTG TAGCTGTGAA
  CCTCTAGGGG GCGCTCTTTC TCACAAAATA TTAGAGTGTA ATCTCTGAGT CTGGAATGGG
  Y
  TTACTCTAGG GGTGTGGCCT CAAGGGAGAA CATCTGCCTA TAAGAAGTTT GGTTAGACCT
  AAAGTATAGA AACCATCTAG GTATTTGAAG AATGTCCCCG TGAGCTTAAA CTAGTCGTTC
  CTAGAGCTGC CAAAGCAAGA ACCTGGAGGT TCTCTTCGGT GGTCCCTCAT CCTGCTGAGC
  CAAAAGTGAT GCCCGTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47830014	NES11683222	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	C		C
ss321763918	CHEV_6_21935144	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33701521					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830014	NES11683222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21985143 () rs orientation: forward

Symbol	Name	Function Class
Cped1	cadherin-like and PC-esterase domain containing 1	772 bp upstream
Cpgi17190	CpG island 17190	623 bp proximal
Rr627034	regulatory region 627034	43 bp distal
Rr627035	regulatory region 627035	282 bp proximal
Rr627036	regulatory region 627036	962 bp proximal
Tssr1788	transcription start site region 1788	1109 bp upstream
Tssr55139	transcription start site region 55139	759 bp upstream
Tssr55140	transcription start site region 55140	834 bp upstream
Tssr55141	transcription start site region 55141	987 bp upstream
Tssr55142	transcription start site region 55142	1011 bp upstream
Tssr55143	transcription start site region 55143	1037 bp upstream
Tssr55144	transcription start site region 55144	1207 bp upstream
Tssr55145	transcription start site region 55145	1234 bp upstream
Tssr55146	transcription start site region 55146	1294 bp upstream
Tssr55147	transcription start site region 55147	1743 bp upstream
Tssr55148	transcription start site region 55148	1826 bp upstream