rs33701519 SNP Detail

Summary

• ID
  rs33701519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21984760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATTAAAT AGTAGTAAAA CATTTTATAG ACTATATGTA
  AATAGACTGA GGTAAGTTAT TGTTTATTCT ATATTGACCT AATTAATTTG TTTTTAAGGT
  R
  CAAACTTTCC TTTTCTCTTC TCTTCTTCTT TTTTTGTTTT TTTATTCTGT TCTTTTCTTT
  TTTATTTTTT CTTTTGTTTT TTTTTCTTTT CTTTTTTGTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47830012	NES11683354	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33701519					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830012	NES11683354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21984760 () rs orientation: forward

Symbol	Name	Function Class
Cped1	cadherin-like and PC-esterase domain containing 1	1155 bp upstream
Cpgi17190	CpG island 17190	1006 bp proximal
Rr627034	regulatory region 627034	319 bp proximal
Rr627035	regulatory region 627035	665 bp proximal
Rr627036	regulatory region 627036	1345 bp proximal
Tssr1788	transcription start site region 1788	1492 bp upstream
Tssr55139	transcription start site region 55139	1142 bp upstream
Tssr55140	transcription start site region 55140	1217 bp upstream
Tssr55141	transcription start site region 55141	1370 bp upstream
Tssr55142	transcription start site region 55142	1394 bp upstream
Tssr55143	transcription start site region 55143	1420 bp upstream
Tssr55144	transcription start site region 55144	1590 bp upstream
Tssr55145	transcription start site region 55145	1617 bp upstream
Tssr55146	transcription start site region 55146	1677 bp upstream