rs33698687 SNP Detail

Summary

• ID
  rs33698687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21948033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCATG TAGAATTCCT
  GCTTGAACAG CTATGCATCC AGCCACTGTA AGAAGACAAC GTCAAAAATC AGTTCTCAAG
  GAGGAGTCTA ATAGAAGACA GGATCCCAAG AGGAATAGTC CCTATGTAAG AGTAGGTGAG
  CAATAAACTC TTTTCATATA AGAGGCCACT AAGAAAACAT GCTTGTCTTG GACTTAAGAG
  R
  CCAATAAGGA AGAAAAAGTC TCCCTTGAGA GTATATAATG AAGTATTTTC ATTACAGGTT
  CCAATTCAAT CTATCGGTGC AATAGAATAA ACCTCAACTA CATAACTTAA TTTGACCCTA
  AGTTTGATGG TGTCTTGCAG CAAAGTTGCA GAGTCAAATG CTAATATTCT CTAGCAAAAC
  TCGATTTTAA CTCCAGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47829798	NES11685022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33698687					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829798	NES11685022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21948033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	1167 bp proximal
Gm68432	predicted gene, 68432	within coordinates
Ing3	inhibitor of growth family, member 3	mRNA-UTR
Rr399583	regulatory region 399583	1165 bp upstream
Rr399584	regulatory region 399584	1840 bp upstream
Rr627030	regulatory region 627030	515 bp proximal
Rr627031	regulatory region 627031	1325 bp proximal
Rr627032	regulatory region 627032	1634 bp proximal
Rr627033	regulatory region 627033	1971 bp proximal
Tssr55136	transcription start site region 55136	1600 bp upstream
Tssr55137	transcription start site region 55137	1954 bp upstream