rs33697941 SNP Detail

Summary

• ID
  rs33697941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21947898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAATGAAC TGATATTCTA
  CTAGGACATA TAGAAATTCT CAGAATGGAT ACAGAAGGAA TGAGCAAAGG AAATGAGCAC
  GTTTGAGGTA AGCTGGGAAC GAAGTCAGCT TTAGTTCAGA GACTATCAAT CAAATCTTGG
  CCATGTAGAA TTCCTGCTTG AACAGCTATG CATCCAGCCA CTGTAAGAAG ACAACGTCAA
  M
  AATCAGTTCT CAAGGAGGAG TCTAATAGAA GACAGGATCC CAAGAGGAAT AGTCCCTATG
  TAAGAGTAGG TGAGCAATAA ACTCTTTTCA TATAAGAGGC CACTAAGAAA ACATGCTTGT
  CTTGGACTTA AGAGGCCAAT AAGGAAGAAA AAGTCTCCCT TGAGAGTATA TAATGAAGTA
  TTTTCATTAC AGGTTCCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47829792	NES11685019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33697941					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829792	NES11685019	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21947898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	1302 bp proximal
Gm68432	predicted gene, 68432	within coordinates
Ing3	inhibitor of growth family, member 3	1672 bp upstream
Rr399583	regulatory region 399583	1300 bp upstream
Rr399584	regulatory region 399584	1975 bp upstream
Rr627030	regulatory region 627030	650 bp proximal
Rr627031	regulatory region 627031	1460 bp proximal
Rr627032	regulatory region 627032	1769 bp proximal
Tssr55136	transcription start site region 55136	1735 bp upstream