rs33697939 SNP Detail

Summary

• ID
  rs33697939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21947810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTTCA AGATTAGCTT
  GGATTACAAT AGTGAATTGG AGGTCAGCTT GGGCTACCCA GGATCCCATC TCAAATAAAC
  AAATGGATTC AAATGAACTG ATATTCTACT AGGACATATA GAAATTCTCA GAATGGATAC
  AGAAGGAATG AGCAAAGGAA ATGAGCACGT TTGAGGTAAG CTGGGAACGA AGTCAGCTTT
  W
  GTTCAGAGAC TATCAATCAA ATCTTGGCCA TGTAGAATTC CTGCTTGAAC AGCTATGCAT
  CCAGCCACTG TAAGAAGACA ACGTCAAAAA TCAGTTCTCA AGGAGGAGTC TAATAGAAGA
  CAGGATCCCA AGAGGAATAG TCCCTATGTA AGAGTAGGTG AGCAATAAAC TCTTTTCATA
  TAAGAGGCCA CTAAGAAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47829790	NES11685018	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33697939					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829790	NES11685018	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21947810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17189	CpG island 17189	1390 bp proximal
Gm68432	predicted gene, 68432	within coordinates
Ing3	inhibitor of growth family, member 3	1760 bp upstream
Rr399583	regulatory region 399583	1388 bp upstream
Rr627030	regulatory region 627030	738 bp proximal
Rr627031	regulatory region 627031	1548 bp proximal
Rr627032	regulatory region 627032	1857 bp proximal
Tssr55136	transcription start site region 55136	1823 bp upstream