rs33697372 SNP Detail

Summary

• ID
  rs33697372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TCTTTAATTT TAATAATGTG
  R
  AGTGTTATTA GTCATGTAAT AGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45309849	mCV25080446	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss320332114	CHEV_2_69562353	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33697372					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554640 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			552 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1389 bp downstream
Rr558457	regulatory region 558457			1193 bp distal
Rr558458	regulatory region 558458			1502 bp distal
Rr558459	regulatory region 558459			481 bp distal
Tssr18132	transcription start site region 18132			1456 bp downstream
Tssr18133	transcription start site region 18133			1420 bp downstream
Tssr18134	transcription start site region 18134			1228 bp downstream
Tssr18135	transcription start site region 18135			1203 bp downstream
Tssr18136	transcription start site region 18136			1018 bp downstream
Tssr24445	transcription start site region 24445			1513 bp upstream