rs33697226 SNP Detail

Summary

• ID
  rs33697226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21988288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATTCTG TATTAATACC
  GAGGGTATAG TTGCACTATT TTTACTTGTG AAGTATAGGG TACAACACAA ATCCAGGGAA
  CATAAAATGT CCATTTTACT ACTGCACTCT GTTCATGCCT GCCAGACAAA TGCAGGCCCC
  TCATTGTCAA GTATAAAGAA GAAAACTAAA AGAGGTGAAA AACAAATTAT TTGGGAAGTC
  R
  TGATGGAAAA CCCACCGAAC TGGGTGGCAA GATACCTTTG GGACCTGCAG GAGGTGCCTT
  TTATCTATGT AGACTTGGGG GGAGTTTCTG AGCCTGCTTA ATAGTACTTG GAGCAGAATT
  TTATCTTGGG TGGCAGCATG GTTGCTGTTG TCAGTACTGA CACCTCGGGG GACACTGTGG
  TGTTTTTCAG GCTCATAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47830036	NES11683122	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33697226					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830036	NES11683122	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21988288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr627036	regulatory region 627036			1683 bp distal
Rr627037	regulatory region 627037			1807 bp proximal
Tssr55144	transcription start site region 55144			1927 bp downstream
Tssr55145	transcription start site region 55145			1854 bp downstream
Tssr55146	transcription start site region 55146			1832 bp downstream
Tssr55147	transcription start site region 55147			1372 bp downstream
Tssr55148	transcription start site region 55148			1293 bp downstream