rs33697224 SNP Detail

Summary

• ID
  rs33697224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21987518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGATTTA CACATCAGAA
  ACAAAAGTCA GTTTTAAAAT CTGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAGAAAAAAG TCCGTATCTC TTTCTTAAAT CCAAGAGAAT GAATGATAAG ACTCCCAAAT
  TCAAGGATTC CTCCAGAGTT CCATGTCAAG ACCTGCTAAG TTGATTCTGA GTTGGTGACT
  R
  TGTTTCCAAA CTAATTATTT CGGAAGAATT TAAAAGAATA TAGTATCATA TGCTTCTTAA
  AAATACTTGA CATGGGGTTT AATTGTTCAT AGAATTAGGA GAACACTGGT CCAGTATTGG
  GTCCATACCT AGACTCTAAG CACTCAGGAG GCGGAGGCAG TAAAATTATG TCACGCTTCA
  GTCCAGCCTG CTTCACATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47830034	NES11683246	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	G		G
ss321763920	CHEV_6_21937519	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33697224					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830034	NES11683246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21987518 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi17190	CpG island 17190			1450 bp distal
Rr627035	regulatory region 627035			1593 bp distal
Rr627036	regulatory region 627036			913 bp distal
Tssr1788	transcription start site region 1788			1255 bp downstream
Tssr55139	transcription start site region 55139			1547 bp downstream
Tssr55140	transcription start site region 55140			1527 bp downstream
Tssr55141	transcription start site region 55141			1369 bp downstream
Tssr55142	transcription start site region 55142			1344 bp downstream
Tssr55143	transcription start site region 55143			1309 bp downstream
Tssr55144	transcription start site region 55144			1157 bp downstream
Tssr55145	transcription start site region 55145			1084 bp downstream
Tssr55146	transcription start site region 55146			1062 bp downstream
Tssr55147	transcription start site region 55147			602 bp downstream
Tssr55148	transcription start site region 55148			523 bp downstream