rs33697061 SNP Detail

Summary

• ID
  rs33697061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:21946990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATCCCC ATGTCTTAAT
  CTCTATTGCT ATTCCCCATT TACACATATG GACACAGGCA CATTGAACAT TAAAACCACC
  TTCAACATTT CACAGCTTTT GTGAGACAGT GACAGAGAAA GTGGAGAACA GTGAGGAAAG
  AAGGAGAGCT TCAATGATGC AGTTTAGCCA CAGGAGCAAG AGGACCACAC ATTCATGTGC
  Y
  ACAATAAACA CACTTGCATT ACAGTGCTGT TGGTGTCTTG TCTCTACATT CTCAATTCAC
  ACTGTAAGAC AGTGCTTAGA TGCCTAAGAT AGGACCACCT TCAGCACATC CGTGATGAAT
  TAATACGCTA TTATCAGGGA GTGTAGGGCT ACAAACACAG AGACAGTCCT TTATATCATA
  GGAAGCACTG CCAAGAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47829782	NES11685067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss321763862	CHEV_6_21896991	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33697061					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829782	NES11685067	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21946990 () rs orientation: forward

Symbol	Name	Function Class
Gm68432	predicted gene, 68432	within coordinates
Rr627030	regulatory region 627030	1558 bp proximal