rs33696270 SNP Detail

Summary

• ID
  rs33696270
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21987170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAACTCA GGCTAGCAGA
  TGTGAAGAAG GATACCGGCA GGACAAACAA TGCTTCCTTC TCTCTGCGAG TACCCAGGAA
  ACCAGGAAGG TAAGTCTGAG TTGAGTTTAT CCTGGGCGTC TGTGGTCGGC CTCTCTCTCC
  TTTCTGCAAA ACTAAAATTA ACTTCCATGT GGTCCGAATG GGAGCCAGAG TGAAAACAGT
  S
  CGGAGTGACC CGGTGACTGG GAGAGGTATT ACATAAGCTG CCAAACTTCC TAAACCTACT
  TAAAGAGTTC TGCCCTTTAT CCTTTAGAGG CTACCTTCAT TGCAGTGAGG GAAAATCGCT
  TTTAAGATGT TAGAAGTCTA CGAGAGCTGA GGATTTACAC ATCAGAAACA AAAGTCAGTT
  TTAAAATCTG AAAGAAAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47830030	NES11683241	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33696270					SNP	G	G	G	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830030	NES11683241	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21987170 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr627035	regulatory region 627035			1245 bp distal
Rr627036	regulatory region 627036			565 bp distal
Tssr1788	transcription start site region 1788			907 bp downstream
Tssr55139	transcription start site region 55139			1199 bp downstream
Tssr55140	transcription start site region 55140			1179 bp downstream
Tssr55141	transcription start site region 55141			1021 bp downstream
Tssr55142	transcription start site region 55142			996 bp downstream
Tssr55143	transcription start site region 55143			961 bp downstream
Tssr55144	transcription start site region 55144			809 bp downstream
Tssr55145	transcription start site region 55145			736 bp downstream
Tssr55146	transcription start site region 55146			714 bp downstream
Tssr55147	transcription start site region 55147			254 bp downstream
Tssr55148	transcription start site region 55148			175 bp downstream