rs33696268 SNP Detail

Summary

• ID
  rs33696268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21986783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGACATC TTAAAAAAAA
  ATCTGGCCAG TCACTTCTTA CTGTCCTTCA TTTAAGGGCT ATTAACCACC TCTGACCGCT
  GGGTCCTATG AATCTTTGGC ATGAACCTTC GGAAAGTTTT CAAGCGGAGA TGGGGCGAAC
  TTGATTGGAA TTGTGTAAAA AGAAGACAGA TGTGTGTTTT TTTCACACTG ACAACGTGGC
  Y
  AGGGGCCAAG TGATCCTGGA CTGGTCATGG TCTGTCGACC CGGGTTCCTT TGTCGCCGGC
  GATTTTGCCC CCGACCTTTC CTGGTGGGTT TGGTGGTGGC GATCTGTCTC TTTTACCAGA
  CCCTGACACT CCGAGGGACT AAGAAGATTG CAGCGGACGT CTCTGGCACT GTCCCACACA
  CACCCTCTCA AACTCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47830028	NES11683239	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33696268					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830028	NES11683239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21986783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr627034	regulatory region 627034			1683 bp distal
Rr627035	regulatory region 627035			858 bp distal
Rr627036	regulatory region 627036			178 bp distal
Tssr1788	transcription start site region 1788			520 bp downstream
Tssr55139	transcription start site region 55139			812 bp downstream
Tssr55140	transcription start site region 55140			792 bp downstream
Tssr55141	transcription start site region 55141			634 bp downstream
Tssr55142	transcription start site region 55142			609 bp downstream
Tssr55143	transcription start site region 55143			574 bp downstream
Tssr55144	transcription start site region 55144			422 bp downstream
Tssr55145	transcription start site region 55145			349 bp downstream
Tssr55146	transcription start site region 55146			327 bp downstream
Tssr55147	transcription start site region 55147			103 bp upstream
Tssr55148	transcription start site region 55148			186 bp upstream