rs33696266 SNP Detail

Summary

• ID
  rs33696266
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21986397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGCCAA ACTGCTATCC
  CCCTTTTTTA TGTTAAAAGC CGTGAATGCT AGCAGCAAAG TGGCAATTTA AAACTGAACG
  AAAGGAAGCA GCAGTTCTAC AACATAAAAG GCTGGGAGCG GGATGGCTTT AAAACCGGAG
  GGAAAATGAG AAACTGCTAG GACAACCTGG CCGGCGCCCA GCTGTGCAAC AGGCACTTCG
  S
  GTTAAATCGA CTGCGTCTTC GGCTGGTTTC TGCCTCCAGA CCCGCTTTAC GGTGCTTTCT
  TTTTGCCCCA AAAGAGGAGA CAAGCTGAAC TCCTGACTTT AAGAATGTTG TGGAAGTAAG
  GCATTACCGG AAGGAACTCT TGGTAGCTGG GGATGCATTC GGATGATTTC TTATAACTAT
  CTTTATTTTG ACATCTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47830026	NES11683236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33696266					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47830026	NES11683236	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21986397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17190	CpG island 17190			329 bp distal
Rr627034	regulatory region 627034			1297 bp distal
Rr627035	regulatory region 627035			472 bp distal
Rr627036	regulatory region 627036			within coordinates
Tssr1788	transcription start site region 1788			134 bp downstream
Tssr55139	transcription start site region 55139			426 bp downstream
Tssr55140	transcription start site region 55140			406 bp downstream
Tssr55141	transcription start site region 55141			248 bp downstream
Tssr55142	transcription start site region 55142			223 bp downstream
Tssr55143	transcription start site region 55143			188 bp downstream
Tssr55144	transcription start site region 55144			36 bp downstream
Tssr55145	transcription start site region 55145			within coordinates
Tssr55146	transcription start site region 55146			40 bp upstream
Tssr55147	transcription start site region 55147			489 bp upstream
Tssr55148	transcription start site region 55148			572 bp upstream