rs33694535 SNP Detail

Summary

• ID
  rs33694535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165836499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CTTCTGGCCT CTGTGGACAT
  Y
  AGGCATCCAC CTAGTGCACT GATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45310000	mCV23746319	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148248047	ENSMUSSNP4908465	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320609300	CHEV_2_165820079	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33694535					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165836499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12718	CpG island 12718	857 bp distal
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570096	regulatory region 570096	1944 bp distal
Rr570097	regulatory region 570097	454 bp distal
Rr570098	regulatory region 570098	1562 bp distal
Rr570099	regulatory region 570099	1053 bp distal
Rr570100	regulatory region 570100	9 bp distal
Rr570101	regulatory region 570101	1466 bp proximal
Tssr21748	transcription start site region 21748	1960 bp downstream
Tssr21749	transcription start site region 21749	1912 bp downstream
Tssr21750	transcription start site region 21750	1892 bp downstream
Tssr21751	transcription start site region 21751	1853 bp downstream
Tssr27667	transcription start site region 27667	836 bp upstream