rs33692906 SNP Detail

Summary

• ID
  rs33692906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21839442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGATCAT GGCCAGGTAC
  TGCACTATGT ACCAGAGACG GGAACGAGAA GTAGCTGACA CTATCTCCAT GATGCATTTC
  TCTAAGGGAA GAGGACATAC ATTGCCATCA TCAGAAGTGT GAATGTGCAA CTGCAGGCTG
  TACTAAGTAC AGGAGAGAAC AACTCCTTTC AGGCTGTCTG ACTCACAAGG TCAAAGGGAC
  Y
  TCTCTATGGC AGCTGGGATG TGAAGAGCAA AGTCAAGTTA ATTAGGAGGG AAAGGATAGA
  AAGGATTTTC CAGTCAGAAG GAAAAGCAAA GGTTGCAGAG GAGAAGGCAG CATGGCATGT
  TCGGGGGAGG GGAACGGCTC CTGGGAATGC ACAGCTGGGC AAGGAAACTT GTCTTCGAAG
  CTGCCTAAAG GTATGTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47829216	NES11689401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs33692906					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829216	NES11689401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21839442 () rs orientation: forward

Symbol	Name	Function Class
Rr627016	regulatory region 627016	within coordinates
Tspan12	tetraspanin 12	Intron