rs33691904 SNP Detail

Summary

• ID
  rs33691904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21838484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATAATAA TTCTGCCCAG
  AAACCTTTTC TAAAAAATAA TTAAAATTTC CTCTCACCCC TCCAACTTAT TCTTGTGTTT
  CTTAGCCCAT TTCCAACCCT GAGTCTTCAC TGTGTATACC TAATTCATAG TGGTTGTCAC
  TAGACACAGT TCTTGCTCTT ATAGCAAAAA GAAAGTTGGC TCCTAAATTC TGAAGACTTC
  Y
  CTATCTTATC TGAAATCTTT TCAAAAACGT GTCTTTGTTT TTTAAAAACA TACTATAACT
  CTCAAGGGAT TCAATATAAC CTGACTTTTA GCATTTCTGG CAGTTTGAGG AACATCAGTA
  ACTTCGACTT TAATGCTGAC AGGGCACGAG TCTGAGGTGA TGCAGACACT GACTGCAAAC
  CAGGCTTTCT AGATAAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47829194	NES11689389	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33691904					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829194	NES11689389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21838484 () rs orientation: forward

Symbol	Name	Function Class
Rr627016	regulatory region 627016	869 bp proximal
Tspan12	tetraspanin 12	Intron