rs33690529 SNP Detail

Summary

• ID
  rs33690529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21822853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAATTG CAGCACTCTT
  TACTGGACAT TTTAACATTT TAAAAACAGA CCCTTTGACT CTTTCTCCCC ATTATATAAC
  AATTCTTTGA ACAAACAAAA AGTTTGATTA AAAGCCTGTG TTAGCTAAAT GATAAATGAT
  AAACCCCAGT CTCTCCCCTG TCAAATACTG AACTCTGCAA ACTTTCAGCG CTAAGTGTCT
  K
  GATGTCAGCT GTTTATTTTT CCGCCCTCAG TCACTGGAGG TTTAAAAATA TTATATTACT
  TATAGTTAGT AAATAAGGGA ATTCCAGCGC CAAATATTTG TACAAGATAA TGGAATGGCT
  TGCCCTTCTG TTAGGAATTC ACAGGGAAAC GCTGACAGAC CAAGAATAGT TGCTGCTTAA
  AACACACACA TACACATAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47829002	NES11690267	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33690529					SNP	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829002	NES11690267	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21822853 () rs orientation: forward

Symbol	Name	Function Class
Rr627014	regulatory region 627014	within coordinates
Tspan12	tetraspanin 12	Intron