rs33690454 SNP Detail

Summary

• ID
  rs33690454
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121128652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG CGCCTAACTC CTTACTGCCA
  K
  CCGCGGGCAA AGGCAGAGAA AGCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45309460	mCV23082165	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss147383223	ENSMUSSNP3330141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320482579	CHEV_2_121123907	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33690454					SNP	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121128652 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			1418 bp proximal
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			419 bp distal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			438 bp distal
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr563801	regulatory region 563801			1673 bp distal
Rr563802	regulatory region 563802			within coordinates
Tssr19741	transcription start site region 19741			421 bp upstream
Tssr19742	transcription start site region 19742			1312 bp upstream