rs33690291 SNP Detail

Summary

• ID
  rs33690291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21839975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAACCAT CATAAAAAAA
  AACTCTATAG AAGATTCTTA TGATGAAGTA AATCCAAATA TATTACCTGT TATTACCATG
  TGTCACATTT AACCCGAGAG TTTCTCTTAA TGCGTCTCAG TGTAAACTAT TCCTAAATCA
  GTTCAGACGT GGGATTATCT GATATGGAAA GGACTACTGA GTGAACTCTG CGCAGAGCTA
  Y
  TGGCCAGCCA TTCTCCATCT TAGCACGACT AAAACGGGTC CCAGCTCCAC TTTTCTCCAA
  GCCTTTTGTC ACCCCTCACA GTGTTTACAA GCCTAGTGAA TGGAGTAATG AACCCTTCAA
  TCACATCGGC TGGCAGCTTG GCAGACAGCC TGAACCTCTC CCTCTTTTTC TGCTGGACAT
  TTAATTAGTT TTGAATCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47829232	NES11689410	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690291					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47829232	NES11689410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21839975 () rs orientation: forward

Symbol	Name	Function Class
Rr627016	regulatory region 627016	within coordinates
Tspan12	tetraspanin 12	Intron