rs33689823 SNP Detail

Summary

• ID
  rs33689823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21822215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTTTAA GGAAGCTGAC
  TTTCTAAATA TTTTTTGCCT CTAACTTTTT AAAATCTACT GGAATTATAA AAATAATCTT
  TGCCAACAAA ACCAGTGTTA AACCTAGCTG AACCTAGGAG GACATTGAGA AATGTAGAAA
  ATGAATATTT TAATTATAGC AGTCTCTTAT AGTGAAAGTA TGCTCTGTGA AAAACTATTC
  Y
  ATCCGAGTCT CTAGTAGGAA CTATGTGGTG TACACTATGG ATAAAAACCA AACCCCTGTA
  TCCAACATAA AAAAATAATA ATAATAAGGA AGCTGCAATC CACGCCGGTT TTCTCACAAA
  TATCAATTAG AAAAGACTTT TTTTTTCAAC AATAAAAATG TGTAATGTTT ACATACGTCT
  TGTGAGAAAA TAAATAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47828996	NES11690261	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33689823					SNP	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828996	NES11690261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21822215 () rs orientation: forward

Symbol	Name	Function Class
Rr627014	regulatory region 627014	408 bp proximal
Tspan12	tetraspanin 12	Intron