rs33689821 SNP Detail

Summary

• ID
  rs33689821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21822053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTATAA GGAAGGGCTA
  GACAAGTTCA ATAAATGTCA AAAGAAAGGG ATTTTATTCC TTTATATCTT TACTTTTCTT
  ACTTTACTAT GAACAATATT TTAAAAAAAA ACCTTCTCAG GAGACGATAT GTGCTTTTTA
  TATGAAATAT TTTAAATACT TTTCATTTTT AAGGAAGCTG ACTTTCTAAA TATTTTTTGC
  Y
  TCTAACTTTT TAAAATCTAC TGGAATTATA AAAATAATCT TTGCCAACAA AACCAGTGTT
  AAACCTAGCT GAACCTAGGA GGACATTGAG AAATGTAGAA AATGAATATT TTAATTATAG
  CAGTCTCTTA TAGTGAAAGT ATGCTCTGTG AAAAACTATT CCATCCGAGT CTCTAGTAGG
  AACTATGTGG TGTACACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47828994	NES11690259	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33689821					SNP	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828994	NES11690259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21822053 () rs orientation: forward

Symbol	Name	Function Class
Rr627014	regulatory region 627014	570 bp proximal
Tspan12	tetraspanin 12	Intron