rs33689742 SNP Detail

Summary

• ID
  rs33689742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155096336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGAGACAG CAGAGGCAGT CAGGTGCAGA TTCAGTCAGA
  CTGCGTGATC TGACTGTAGA AGTGTCTGTC TATTCAGCAG AGGCCAAGAG TGTTCTGGGA
  R
  AGTGGGGAGA TGTAAAAGCC ACAGACAGCA GATCTGGAAG CAGTCCTGGC AAGGTGCCAT
  TGGTATGGCC AGGTCTGTCC AGCCTCAGAA AAAACACCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49516455	NES12835804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33689742					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516455	NES12835804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155096336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420979	regulatory region 420979			1322 bp distal
Rr420980	regulatory region 420980			1445 bp proximal