rs33689419 SNP Detail

Summary

• ID
  rs33689419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154493257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACATACAC ACAAAACCTT CAGTGTCATT AGAACAGAAA
  AGAAACCGTG GGTATCAAGC AGCTAATAGC TATATTCATT TACAAGTTAA TTATTTATAT
  Y
  GGTATAATTA CATAAATAGA TCATATTGAT TTACCATAGG AACATAATTT GTGTTAGCAA
  AATATTTATT TTTAGTTTTC AAAGATCAAA GAATTGTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49515697	NES12865430	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T		T		T	T	C
ss145765765	ENSMUSSNP5398407	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33689419					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49515697	NES12865430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154493257 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	13 bp upstream
Rr420845	regulatory region 420845	283 bp proximal
Rr420846	regulatory region 420846	1471 bp proximal