rs33687540 SNP Detail

Summary

• ID
  rs33687540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105866222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTGTTT GTCAGAGGAA
  GGAACAGGAT CATGTTCAAG GCAATTAGAA GAACAAACGT CCGAATGAGT ATGCAAGCTG
  GCTAACGTGA AGGAAAACAG CAATTTTTGG CTTGACGCTA GGAAATGGAA AGAGAATAAG
  ACGTGGTGAC ACTCACCCTG GACCTAGGGC GGCCGCGTTC TTCAGACACG GGGCTGGAAA
  Y
  ACACAAGACG GAGGTTAGCA AAGTCAAGGA GAAATCGCGT TTCTACCTTC CCGGGTGTCG
  GCCCTGGCAT CCGTCTCTGC CGCGCCCTGA GATGCTGGGC GGCCCGGGAG CTCTCCAGAT
  CGCTCCCGTG GGTGAGCTCG GGCCCAAACG CCGCAGTCCG TCCTCTACCC GCTTCCCGCC
  TCCCCGGCCT GGCTTCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843901	NES10700420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33687540					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843901	NES10700420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105866222 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp5pb	ATP synthase peripheral stalk-membrane subunit b			Intron
				Splice-Site
Cpgi13663	CpG island 13663			within coordinates
Gm42890	predicted gene 42890			597 bp upstream
Rr582821	regulatory region 582821			within coordinates
Rr582822	regulatory region 582822			838 bp proximal
Rr582823	regulatory region 582823			1183 bp proximal
Rr582824	regulatory region 582824			1986 bp proximal
Tssr997	transcription start site region 997			293 bp downstream
Tssr31092	transcription start site region 31092			504 bp upstream
Tssr31093	transcription start site region 31093			547 bp upstream
Tssr34944	transcription start site region 34944			306 bp downstream
Tssr34945	transcription start site region 34945			346 bp downstream
Wdr77	WD repeat domain 77			592 bp upstream