rs33684280 SNP Detail

Summary

• ID
  rs33684280
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21711448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCTTC ATATTAGATA
  AGCAAGAAAA ATAAAAGTCA TATGAATAAA ACTAGAGGTC TACCAATGGA GCATTCAAAA
  CTATGTAAAA ACTTTGAACT TTTTGCAATT TCTTAGCTGT TAATTTTTTT GTAAAAATGT
  CAAATGGTGA AATTAAATGG ATATAGATAA AATTTTATTT ACAATATGTT GTGTGTAAAA
  W
  TTACCAACAT TTGCCAGCCT ATAAAAACAC AAAAATTAGT AAGATTAATA GACTAACAAA
  TAGATGATTG GTTCGTGCAT ATGTATATAC AGACATATCT TCATACATGG ATAAATAGGA
  AATAAATATA TACAGACTCA CTTGAGTTCT TTGCTTGTAC CATTTGGACC CTTGAATATG
  TAAGGGAGAT GGATGAATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47828384	NES11694437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33684280					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828384	NES11694437	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21711448 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	1871 bp distal
Rr627001	regulatory region 627001	1967 bp distal