rs33683535 SNP Detail

Summary

• ID
  rs33683535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21707426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCTGTC AGCCCGAAGC
  CAAATGGCCA TATTTGCGGG AACCTTGATC TGCTTGCTGG GATAATTTTA TTTCGTTGAA
  AGACAAGCTC GTCTCCTCTA ATGCACTCCC CAGGTAAAAC CAGAGTGGAG CCAGCTTGGC
  AAAGCAAGCA CCATACGATG GTCTTTGCAA AGGATTGCTA ATGCTCCCGA CTTACATCAG
  Y
  CTAAGATCAG CAGTGGCAGG ACAGGGAGAA AGGGAAAGTC CGCCCCTTCC AAGGATGGTG
  TGTGAGATTA TGATAACTGC CACTGGCTGG GCGTCTGAGC TCACAAAATT CTCCAAACAA
  CTTCAAGGCA TTTAACAATG CTGGCCATAG TCACATGACA ATAAAAAGCA TGCAGGAAGT
  GGGGAAATGT CGGGTTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47828322	NES11694619	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	C	T		T
ss321763600	CHEV_6_21657427	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33683535					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828322	NES11694619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21707426 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	1870 bp proximal