rs33682758 SNP Detail

Summary

• ID
  rs33682758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21710129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCTAG TTTCCCCTTT
  GTCATAGAGG CTGAATGTGT TAGTTTTCTG AACGATAAAA AGATTCTAAA ATATACTTTT
  AAAAGAATAA TAGTTCATAG ATTGGCTGAA ACAAAAGATA GCACACAATT CTTGAAATAA
  TGTATGTGAA ATTCTCAAAC TATGTAAGAG AAGGGGATTG ACTCTTTGGG CAAAATAGGC
  R
  AGAACAAAGT CATTGCTGCT CTTAGGCAAA CATTGATTTC AAAATGTCAA AGAGCAATCT
  TACCACTGTG AAATTAATAC CAGAGCCCCT CTGGCAAAGA AGGTCTGTCC CACAAGCAGG
  TGTTATATGG CAACACTTTA AAAAGTCATT TGCTATTTGC AAACATAGCA GCCACTATAA
  AAACTATCCA TCAAACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47828362	NES11694532	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss133070082	ENSMUSSNP4246342	ENSEMBL	ENSEMBL_Sanger	f	SNP		G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33682758					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828362	NES11694532	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21710129 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	552 bp distal
Rr627001	regulatory region 627001	648 bp distal