rs33682093 SNP Detail

Summary

• ID
  rs33682093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21709888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCGTTTGG CTATTCAACT
  CTCATAGACT CGGTTATAGA GTGGTTGTCC AGTATGAGTG AGGATTTTCT TCTCCTTAAA
  TCAAACAAGA AGGTCTCAGG AAAGGGAAAA ATTATGTGAA GAAGCAGAAC TTTATTCCAG
  ACAATTCACC ATAGAGGGTC CACATTTACC CCACTGAGCT TTATTCATGA ATTCCCTGAA
  Y
  GTCTATTTTC TTTCACTAAA GACCTCTAGT TGTGAAAGAG AACCATCTAG TTTCCCCTTT
  GTCATAGAGG CTGAATGTGT TAGTTTTCTG AACGATAAAA AGATTCTAAA ATATACTTTT
  AAAAGAATAA TAGTTCATAG ATTGGCTGAA ACAAAAGATA GCACACAATT CTTGAAATAA
  TGTATGTGAA ATTCTCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47828356	NES11694526	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33682093					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47828356	NES11694526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21709888 () rs orientation: forward

Symbol	Name	Function Class
Kcnd2	potassium voltage-gated channel, Shal-related family, member 2	Intron
Rr627000	regulatory region 627000	311 bp distal
Rr627001	regulatory region 627001	407 bp distal