rs33681077 SNP Detail

Summary

• ID
  rs33681077
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128000600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGGGAGAAC CCCCACGCGT CATGTCCCTC TCTTGGTGCT GCGACAGTGT GTCCAGTGGT
  TCTATCCCAG AGAGATGTGC TGAGCATGGA CAGCGCTCTG CACTGTGTCG ATGTGAACGG
  AACCTCTGTT CATCACCACA TGGCCGAGTT TTCAGTAAAT ATTTGTTGTG AATGTAAACA
  AGGGAGGGCT TTTCTCTTTT TAATGTACAG ATCCTAGGAA CAGAGAAATA TGCAAGAGAG
  GTGTTTACAT GTGGCGTGTT AATTTTTTTA AACCCACTTT CTTTGATAAC TGTTTTTGGG
  K
  TTTTTTTTTT TTGTCTCATT TTCTTTCAGA AAGTAAAGCT TTTTAGACAA TTTATGGATG
  ATTTTTATAC TCAAATTCTT AACCCACTAC CTACTCAGAG GATTCCATAA CCCTGCAGTG
  GGAACTGAGC CAGCTGATTT ATAAGGCTGC CTTAGTTTAT TTTTAGAAAT TACTGTACAG
  AATTTTTTAA ACAGGAAGAG TATGGTGTTG CCCTCTCTCC TCTGCCATGG CCTCTTTGAG
  TTTCCTTTTG AGTTATTACT ACCAAAACAG TTCTTAGGAA ATGGAATGAG TTCGAGCGGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45308388	mCV23908571	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss147553426	ENSMUSSNP7028999	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33681077					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128000600 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	mRNA-UTR
Rr564663	regulatory region 564663	1775 bp distal
Rr564664	regulatory region 564664	1278 bp distal
Rr564665	regulatory region 564665	298 bp proximal
Tssr639	transcription start site region 639	584 bp upstream
Tssr20049	transcription start site region 20049	11 bp upstream
Tssr20050	transcription start site region 20050	605 bp upstream