rs33680903 SNP Detail

Summary

• ID
  rs33680903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134943030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCAGCAT TTTCTTAAAA TTCCAAGTTG AGAATGTAAT
  CACTTTTCGT TGTGTTAATA GTTGGACAAT AAGAGCTTTG GGTTACATGT AAAATTCACT
  Y
  TGTTAACAAC AATGAACATG GCTTAAATCC ATAGACACCT CTTTGTTTTC TTCTCACCTG
  AACCTGAAAT CTAATCTAAG TCACCAGAAA ACAAAACGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45308014	mCV22314024	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147641096	ENSMUSSNP6291881	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320515729	CHEV_2_134926846	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33680903					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134943030 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	267 bp proximal
Rr565721	regulatory region 565721	839 bp proximal