rs33680460 SNP Detail

Summary

• ID
  rs33680460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105807995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCACCTA GTCACAAGCA
  GTTCCCTTTC CCTGAGCAGG ATTTCCTGTA ACCCAAGTTA CAGGAACCTT GGGGTTTTGG
  GTCTTTATCC ATCCTTTTCA TTTTTACTGA TACTCACTTT AGAGAACTCT TCACGTTCAG
  AGTCCCAGGC CTTGTAAGTT GAAAGGGTCT CAGCCCAGCT CTAAGAAGAG CAGTGAGTTT
  R
  GGAAGTCACC TGAAGTCTTA GGGTCTTACC GGTACTTTGA CAGAGAGTGG GGAAGGAGCA
  TATAAAAAAG GGGGCAAGGA GAAGACACCC TCAAAGATGA CTCTGAGCAC TGGCTGTCTC
  TAAGGCCCCA CTGTTCGCTG GCACATAGCG AGGTCTGTAG AAGCATGAGG CTTTGAGGGA
  AGTGGTCATG ACTTCAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46843088	NES10703081	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33680460					SNP	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843088	NES10703081	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105807995 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	530 bp downstream
Rr582806	regulatory region 582806	1427 bp distal
Rr582807	regulatory region 582807	544 bp distal
Rr582808	regulatory region 582808	689 bp distal
Rr582809	regulatory region 582809	within coordinates
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron
Tssr34935	transcription start site region 34935	151 bp downstream