rs33680454 SNP Detail

Summary

• ID
  rs33680454
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105807091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTACGGC AGATATCACA
  CGGTAGCAGA CCCCTTCTGA ATCCACCCTG TCCTTAAGTC AGGAGACCAG ACTGGGCTGG
  TCTCCACTGT AGAACATGCT CTTTAGCAGA ACAGACTTAA GCACATTCCT TCTCTATTTG
  CTGAGAGTTC CTGCTTTGTG GAGCAAAATG CAAAACTTTT TTTGTTAGGC TGTTCATGCT
  S
  CTTGCCAGCC TTCTTGAGTC CAGAGGATCA GAATATTATG TGGGACTAGA TTGGACTGAC
  CATAGGCAGC CTACCTACCC TCCTTGCTCC TGGTCTCCCT TGCAAAGTCC GAGGTGGTTG
  GCTGAGGCCA GTTTTGAGCC CTCCCCATTT TCTCTCCTTA GCGGCAGCTT GTGTTTCAGA
  GGACGGTGGA AATGTGCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46843082	NES10703125	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33680454					SNP	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843082	NES10703125	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105807091 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	74 bp upstream
Rr582806	regulatory region 582806	523 bp distal
Rr582807	regulatory region 582807	within coordinates
Rr582808	regulatory region 582808	194 bp proximal
Rr582809	regulatory region 582809	575 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron
Tssr34935	transcription start site region 34935	1055 bp downstream