rs33678842 SNP Detail

Summary

• ID
  rs33678842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105805946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCATGGA CTAGATGCAG
  GGGTGTGGGG TGGAGAAGGT TGAGGGAGGA TTGGCAGGCT GCCCTCCATT ACTCCACAGC
  CTAAGAGGAG GAACCAGAAA CCAGAAAACT GGCAAAAAAG AAAGAAAAAA AAAATCCTGT
  TCTCAGTAGT TCTCAGTAGC TGGCCCAACC CATGGATCAT GCACACCCTT CCACACTGAA
  S
  AGCTTCTGCC CAGTCACAGT TTATGTTTGG TATAATTGGT GTTGGCCTAT TCTTGTGTGA
  TTCACTGGAA AGGGCTAAGA TAGTTGACTC AGATTCTGGC CTTTACCCAT CGTAGTTGAC
  TGTAACTGTC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT
  CCCTTCTTTA AGTTACCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss46843070	NES10703142	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs33678842					SNP	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843070	NES10703142	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105805946 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	1219 bp upstream
Rr582806	regulatory region 582806	254 bp proximal
Rr582807	regulatory region 582807	907 bp proximal
Rr582808	regulatory region 582808	1339 bp proximal
Rr582809	regulatory region 582809	1720 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron